Genome sequence of Tibetan antelope sheds new light on high-altitude adaptation

May 17, 2013 ? How can the Tibetan antelope live at elevations of 4,000-5,000m on the Qinghai-Tibetan Plateau? Investigators rom Qinghai University, BGI, and other institutes now provide evidence of genetic factors that may be associated with the species' adaption to harsh highland environments. The data in this work will also provide implications for studying specific genetic mechanisms and the biology of other ruminant species.

The Tibetan antelope (Pantholops hodgsonii) is a native of the high mountain steppes and semi-desert areas of the Tibetan plateau. Interestingly, it is the only member of the genus Pantholops. Tibetan antelope is a medium sized antelope with the unique adaptations to against the harsh high-altitude climate. For non-native mammals such as humans, they may experience life-threatening acute mountain sickness when visiting high-altitude regions.

In this study, researchers suggest that Tibetan antelopes must have evolved exceptional mechanisms to adapt to this extremely inhospitable habitat. Using next-gen sequencing technology, they have decoded the genome of Tibetan antelope and studied the underlying genetic mechanism of high-altitude adaptations.

Through the comparison between Tibetan antelope and other plain-dwelling mammals, researchers found the Tibetan antelope had the signals of adaptive evolution and gene-family expansion in genes associated with energy metabolism and oxygen transmission, indicating that gene categories involved in energy metabolism appear to have an important role for Tibetan antelope via efficiently providing energy in conditions of low partial pressure of oxygen (PO2).

Further research revealed that both the Tibetan antelope and the highland American pika have signals of positive selection for genes involved in DNA repair and the production of ATPase. Considering the exposure to high levels of ultraviolet radiation, positive selective genes related to DNA repair may be vital to protect the Tibetan antelope from it.

Qingle Cai, Project manager from BGI, said, "The completed genome sequence of the Tibetan antelope provides a more complete blueprint for researchers to study the genetic mechanisms of highland adaptation. This work may also open a new way to understand the adaptation of the low partial pressure of oxygen in human activities."

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Story Source:

The above story is reprinted from materials provided by BGI Shenzhen.

Note: Materials may be edited for content and length. For further information, please contact the source cited above.

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Journal Reference:

1. Ri-Li Ge, Qingle Cai, Yong-Yi Shen, A San, Lan Ma, Yong Zhang, Xin Yi, Yan Chen, Lingfeng Yang, Ying Huang, Rongjun He, Yuanyuan Hui, Meirong Hao, Yue Li, Bo Wang, Xiaohua Ou, Jiaohui Xu, Yongfen Zhang, Kui Wu, Chunyu Geng, Weiping Zhou, Taicheng Zhou, David M. Irwin, Yingzhong Yang, Liu Ying, Haihua Bao, Jaebum Kim, Denis M. Larkin, Jian Ma, Harris A. Lewin, Jinchuan Xing, Roy N. Platt, David A. Ray, Loretta Auvil, Boris Capitanu, Xiufeng Zhang, Guojie Zhang, Robert W. Murphy, Jun Wang, Ya-Ping Zhang, Jian Wang. Draft genome sequence of the Tibetan antelope. Nature Communications, 2013; 4: 1858 DOI: 10.1038/ncomms2860

Note: If no author is given, the source is cited instead.

Source: http://feeds.sciencedaily.com/~r/sciencedaily/top_news/top_environment/~3/aCPP7_n7RkE/130517102720.htm

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